PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss02960.1
Common NameLR48_Vigan05g045300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 625aa    MW: 68813.8 Da    PI: 6.3306
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss02960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.3e-102574246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       ++W t+E++ll+ av+++G ++W+t+a +++     +  t+ +c  ++++
  Vang0022ss02960.1 25 QAWGTWEELLLAFAVNRHGFKDWDTVAMEVQsratrLLATARHCEQKFHD 74
                       78**********************************99*******99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002494.7E-82574IPR001005SANT/Myb domain
CDDcd001676.80E-42675No hitNo description
SMARTSM002972.0E-11125451IPR001487Bromodomain
SuperFamilySSF473702.09E-15352451IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.4E-15354449IPR001487Bromodomain
PROSITE profilePS5001411.56360421IPR001487Bromodomain
PfamPF004394.7E-10377436IPR001487Bromodomain
CDDcd043691.50E-13381446No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MENHQNHKGE AEPDRENNQN QNNNQAWGTW EELLLAFAVN RHGFKDWDTV AMEVQSRATR  60
LLATARHCEQ KFHDLSRRFA DQCNDGVTPP QHDGEATGDN SDHVPWLDEL RKLRVDELRR  120
EVQRRDDSIM SLQLEVKRLE EEKAKENDGK DGEKPDLAVP GEVRPENDKT GGEVEEVGPA  180
NSGPERTANA DKMLPTTGDE SDRENQSVNE SNSTGSRFDK TGEGDAKLKV EPDPVQTGSK  240
EVDPVARKGK PVGEESNNGS YDALAKVPTC ESVPPSDERK VEQDDDSSEL HDSVAHSGEG  300
GTRESSEVQS SASLTRKRKT RRRKDVSGGD GRGGGASTLP ENEEVAVKSE PLVGILELIK  360
GHEHCSLIES RLESQLESDR YKDIVKQPLD METIQSRIQK GQYFSCTSAF FRDLLLLFTN  420
ATVIFPVDSP ESQAARQLHR LVTTEMKNHG QAQSDPIPRK SDSLPPNIPV AKADSLLSKN  480
KASGPILVCR KRSTMSAKPS STNFGQKNDQ PIFNDKKERA PSDSKPPTKP SSSDTDEDEP  540
PKAKEKPVTG ARRKERASRH GVGGGSGSAD KRNKNIENSS QSKRSVGRPP KKAAETNAGS  600
SKRKHSQCQV HVLVLITTYF LLPN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314319TRKRKT
2317324RKTRRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014501905.10.0PREDICTED: uncharacterized protein LOC106762478
TrEMBLA0A0L9UJU80.0A0A0L9UJU8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SJK80.0A0A0S3SJK8_PHAAN; Uncharacterized protein
STRINGGLYMA08G15870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-75DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]